Index

_

_abc_impl (bayeso.bo.base_bo.BaseBO attribute) (bayeso.bo.bo_w_gp.BOwGP attribute) (bayeso.bo.bo_w_tp.BOwTP attribute) (bayeso.bo.bo_w_trees.BOwTrees attribute) _get_bounds() (bayeso.bo.base_bo.BaseBO method) _get_list_first() (in module bayeso.utils.utils_covariance) _get_model_bo_gp() (bayeso.wrappers.wrappers_bo_class.BayesianOptimization method) _get_model_bo_tp() (bayeso.wrappers.wrappers_bo_class.BayesianOptimization method) _get_model_bo_trees() (bayeso.wrappers.wrappers_bo_class.BayesianOptimization method) _get_next_best_sample() (bayeso.wrappers.wrappers_bo_class.BayesianOptimization method) _get_random_state() (bayeso.bo.base_bo.BaseBO method) _get_samples_gaussian() (bayeso.bo.base_bo.BaseBO method) _get_samples_grid() (bayeso.bo.base_bo.BaseBO method)

_get_samples_halton() (bayeso.bo.base_bo.BaseBO method) _get_samples_sobol() (bayeso.bo.base_bo.BaseBO method) _get_samples_uniform() (bayeso.bo.base_bo.BaseBO method) _mse() (in module bayeso.trees.trees_common) _optimize() (bayeso.bo.bo_w_gp.BOwGP method) (bayeso.bo.bo_w_tp.BOwTP method) _predict_by_tree() (in module bayeso.trees.trees_common) _predict_by_trees() (in module bayeso.trees.trees_common) _save_figure() (in module bayeso.utils.utils_plotting) _set_ax_config() (in module bayeso.utils.utils_plotting) _set_font_config() (in module bayeso.utils.utils_plotting) _show_figure() (in module bayeso.utils.utils_plotting) _split() (in module bayeso.trees.trees_common) _split_left_right() (in module bayeso.trees.trees_common)

A

aei() (in module bayeso.acquisition)

B

BaseBO (class in bayeso.bo.base_bo) BayesianOptimization (class in bayeso.wrappers.wrappers_bo_class) bayeso (module) bayeso.acquisition (module) bayeso.bo (module) bayeso.bo.base_bo (module) bayeso.bo.bo_w_gp (module) bayeso.bo.bo_w_tp (module) bayeso.bo.bo_w_trees (module) bayeso.constants (module) bayeso.covariance (module) bayeso.gp (module) bayeso.gp.gp (module) bayeso.gp.gp_kernel (module) bayeso.gp.gp_likelihood (module) bayeso.tp (module) bayeso.tp.tp (module) bayeso.tp.tp_kernel (module)

bayeso.tp.tp_likelihood (module) bayeso.trees (module) bayeso.trees.trees_common (module) bayeso.trees.trees_generic_trees (module) bayeso.trees.trees_random_forest (module) bayeso.utils (module) bayeso.utils.utils_bo (module) bayeso.utils.utils_common (module) bayeso.utils.utils_covariance (module) bayeso.utils.utils_gp (module) bayeso.utils.utils_logger (module) bayeso.utils.utils_plotting (module) bayeso.wrappers (module) bayeso.wrappers.wrappers_bo_class (module) bayeso.wrappers.wrappers_bo_function (module) BOwGP (class in bayeso.bo.bo_w_gp) BOwTP (class in bayeso.bo.bo_w_tp) BOwTrees (class in bayeso.bo.bo_w_trees)

C

check_hyps_convergence() (in module bayeso.utils.utils_bo) check_optimizer_method_bo() (in module bayeso.utils.utils_bo) check_str_cov() (in module bayeso.utils.utils_covariance) choose_fun_acquisition() (in module bayeso.utils.utils_bo) choose_fun_cov() (in module bayeso.covariance) choose_fun_grad_cov() (in module bayeso.covariance) compute_acquisitions() (bayeso.bo.base_bo.BaseBO method) (bayeso.bo.bo_w_gp.BOwGP method) (bayeso.bo.bo_w_tp.BOwTP method) (bayeso.bo.bo_w_trees.BOwTrees method)

compute_posteriors() (bayeso.bo.base_bo.BaseBO method) (bayeso.bo.bo_w_gp.BOwGP method) (bayeso.bo.bo_w_tp.BOwTP method) (bayeso.bo.bo_w_trees.BOwTrees method) compute_sigma() (in module bayeso.trees.trees_common) convert_hyps() (in module bayeso.utils.utils_covariance) cov_main() (in module bayeso.covariance) cov_matern32() (in module bayeso.covariance) cov_matern52() (in module bayeso.covariance) cov_se() (in module bayeso.covariance) cov_set() (in module bayeso.covariance)

E

ei() (in module bayeso.acquisition)

G

get_best_acquisition_by_evaluation() (in module bayeso.utils.utils_bo) get_best_acquisition_by_history() (in module bayeso.utils.utils_bo) get_generic_trees() (in module bayeso.trees.trees_generic_trees) get_grids() (in module bayeso.utils.utils_common) get_hyps() (in module bayeso.utils.utils_covariance) get_initials() (bayeso.bo.base_bo.BaseBO method) get_inputs_from_leaf() (in module bayeso.trees.trees_common) get_kernel_cholesky() (in module bayeso.covariance) get_kernel_inverse() (in module bayeso.covariance) get_logger() (in module bayeso.utils.utils_logger) get_minimum() (in module bayeso.utils.utils_common) get_next_best_acquisition() (in module bayeso.utils.utils_bo) get_optimized_kernel() (in module bayeso.gp.gp_kernel) (in module bayeso.tp.tp_kernel) get_outputs_from_leaf() (in module bayeso.trees.trees_common)

get_prior_mu() (in module bayeso.utils.utils_gp) get_random_forest() (in module bayeso.trees.trees_random_forest) get_range_hyps() (in module bayeso.utils.utils_covariance) get_samples() (bayeso.bo.base_bo.BaseBO method) get_str_array() (in module bayeso.utils.utils_logger) get_str_array_1d() (in module bayeso.utils.utils_logger) get_str_array_2d() (in module bayeso.utils.utils_logger) get_str_array_3d() (in module bayeso.utils.utils_logger) get_str_hyps() (in module bayeso.utils.utils_logger) get_time() (in module bayeso.utils.utils_common) get_trees() (bayeso.bo.bo_w_trees.BOwTrees method) grad_cov_main() (in module bayeso.covariance) grad_cov_matern32() (in module bayeso.covariance) grad_cov_matern52() (in module bayeso.covariance) grad_cov_se() (in module bayeso.covariance)

M

mse() (in module bayeso.trees.trees_common)

N

neg_log_ml() (in module bayeso.gp.gp_likelihood) (in module bayeso.tp.tp_likelihood)

neg_log_pseudo_l_loocv() (in module bayeso.gp.gp_likelihood)

O

optimize() (bayeso.bo.base_bo.BaseBO method) (bayeso.bo.bo_w_gp.BOwGP method) (bayeso.bo.bo_w_tp.BOwTP method) (bayeso.bo.bo_w_trees.BOwTrees method) (bayeso.wrappers.wrappers_bo_class.BayesianOptimization method)

optimize_single_iteration() (bayeso.wrappers.wrappers_bo_class.BayesianOptimization method) optimize_with_all_initial_information() (bayeso.wrappers.wrappers_bo_class.BayesianOptimization method) optimize_with_initial_inputs() (bayeso.wrappers.wrappers_bo_class.BayesianOptimization method)

P

pi() (in module bayeso.acquisition) plot_bo_step() (in module bayeso.utils.utils_plotting) plot_bo_step_with_acq() (in module bayeso.utils.utils_plotting) plot_gp_via_distribution() (in module bayeso.utils.utils_plotting) plot_gp_via_sample() (in module bayeso.utils.utils_plotting) plot_minimum_vs_iter() (in module bayeso.utils.utils_plotting) plot_minimum_vs_time() (in module bayeso.utils.utils_plotting) predict_by_trees() (in module bayeso.trees.trees_common)

predict_with_cov() (in module bayeso.gp.gp) (in module bayeso.tp.tp) predict_with_hyps() (in module bayeso.gp.gp) (in module bayeso.tp.tp) predict_with_optimized_hyps() (in module bayeso.gp.gp) (in module bayeso.tp.tp) print_info() (bayeso.wrappers.wrappers_bo_class.BayesianOptimization method) pure_exploit() (in module bayeso.acquisition) pure_explore() (in module bayeso.acquisition)

R

restore_hyps() (in module bayeso.utils.utils_covariance) run_single_round() (in module bayeso.wrappers.wrappers_bo_function)

run_single_round_with_all_initial_information() (in module bayeso.wrappers.wrappers_bo_function) run_single_round_with_initial_inputs() (in module bayeso.wrappers.wrappers_bo_function)

S

sample_functions() (in module bayeso.gp.gp) (in module bayeso.tp.tp)

split() (in module bayeso.trees.trees_common) subsample() (in module bayeso.trees.trees_common)

U

ucb() (in module bayeso.acquisition)

unit_predict_by_trees() (in module bayeso.trees.trees_common)

V

validate_common_args() (in module bayeso.utils.utils_gp) validate_hyps_arr() (in module bayeso.utils.utils_covariance)

validate_hyps_dict() (in module bayeso.utils.utils_covariance) validate_types() (in module bayeso.utils.utils_common)